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primer3

Here are 10 public repositories matching this topic...

Binomica-Labs / SpliceCraft

Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python

genetics biology textual biopython microbiology cloning pure-python mutagenesis workbench plasmid molecular-biology bioengineering terminal-ui primer3 moclo golden-braid restriction-enzymes

Updated May 18, 2026
Python

lhqing / primer_design

Batch primer design for genomic regions

primer blast pcr primer3 primer-blast

Updated Dec 18, 2018
Jupyter Notebook

yi1873 / primer3_rust

A high-performance Rust implementation of primer3 design, leveraging PyO3 to interface with Python's primer3 package. This tool provides fast and reliable primer design for qPCR applications with thermodynamic filtering.

rust pcr primer-design primer3

Updated Mar 27, 2026
Rust

danilkotelnikov / Primery

Species-specific primer design tool: NCBI retrieval → BLAST mismatch analysis → Primer3 design → Primer-BLAST validation. Desktop GUI (PySide6) + PDF/DOCX reports.

python bioinformatics blast pcr ncbi primer-design primer3 molecular-diagnostics pyside6 species-specific

Updated Apr 25, 2026
Python

dieterich-lab / primex

primer-design primer3 splice-junctions

Updated Jan 25, 2018
R

caotianyu0427 / JuncForge

CE-specific qPCR primer design pipeline: Primer3 + pair-wise BLAST against genome & curated RefSeq mRNA to select junction-spanning assays.

python bioinformatics pandas biopython blast junction qpcr ncbi-blast off-target primer-design primer3 splicing-analyses in-silico-pcr cryptic-exon

Updated Apr 26, 2026
Python

pessoa-am / MBPT

A collection of simple python tools for molecular biology and bioinformatics

bioinformatics biopython molecular-biology primer3

Updated May 15, 2023
Python

pessoa-am / Primer3-Streamlit

A web app interface for Primer3 using Streamlit and primer3-py, modeled after Primer3Plus

primer3 streamlit streamlit-webapp primer3-py

Updated Apr 19, 2026
Python

rahriver / PrimerX

Simple shiny app to analyze primer quality.

web-interface shiny-apps rprogramming primer-design primer3

Updated Apr 4, 2023
R

hirschmannielladiversa-bot / gca-primer-design

One-command macOS toolkit: species name → NCBI fetch → Primer3 design → DNA Dynamo visualization. For GCA (Gut Content Analysis) primer design.

macos bioinformatics ncbi gca primer-design primer3 dna-dynamo

Updated Apr 8, 2026
Python

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