Fast interval similarity and scalable clustering for bacterial transcript units (TUs) from mapped long reads.
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May 10, 2026 - Rust
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longreadsequencing
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Nextflow DSL2 pipeline for PacBio HiFi variant calling. Supports minimap2 and pbmm2 alignment with bcftools, Clair3, and DeepVariant variant callers. Fully containerized with Docker. Packaged with benchmarking tools for method validation and testing.
docker bioinformatics genomics nextflow pacbio variant-calling hifi minimap2 nextflow-pipeline dsl2 longreadsequencing
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Mar 16, 2026 - HTML
Retrieval-Augmented Generation system for querying 3000+ long-read sequencing papers from PubMed/PMC
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May 20, 2026 - Python
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Mar 22, 2026 - Shell
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