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romanbaptista / fastq-trim

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A modular, contract‑driven, SLURM‑compatible HPC pipeline for adapter removal and quality trimming of paired‑end FASTQ sequencing data using BBDUK or Trimmomatic, featuring explicit execution ABI, strict preflight validation, and restart‑safe per‑sample processing.

bash workflow bioinformatics genomics hpc reproducible-research sequencing slurm trimming fastq data-pipeline adapter-trimming trimmomatic hpc-workflow bbduk
  • Updated May 14, 2026
  • Shell

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