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@pni-lab

PNI - Predictive Neuroimaging Lab, University Hospital Essen, Germany

README.md

Welcome to the github profile of the Predictive NeuroImaging Lab

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Visit our website: https://pni-lab.github.io

Important links:

➡️ pTFCE: probabilistic threshold-free cluster enhancement (SPM-toolbox and R package)

GitHub license GitHub release GitHub issues GitHub issues-closed

➡️ RPN-signature: resting state network signature of pain sensitivity.

GitHub license GitHub release CircleCI CircleCI2 Docker Build Docker Pulls GitHub issues GitHub issues-closed

➡️ CTP-signature: cortical thickness signature of pain sensitivity

➡️ Statistical quantification of confounding-bias in predictive modelling

  • mlconfound: python package for analyzing and quantifying effects of counfounder variables on machine learning model predictions

GitHub license GitHub release GitHub CI Documentation Status arXiv GitHub issues GitHub issues-closed Binder

arXiv lintex Documentation Status.

➡️ PUMI: nipype-based modular workflow management system.

GitHub GitHub Workflow Status Docker Image Version (latest semver) Docker Image Size (latest semver) GitHub issues GitHub closed issues

➡️ ALIIAS: (Pseudo)Anonymization with LimeSurvey integration and II-factor Authentication for Scientific research

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  1. mlconfound mlconfound Public

    Tools for analyzing and quantifying effects of confounder variables on machine learning model predictions.

    Jupyter Notebook 7

  2. mlconfound-manuscript mlconfound-manuscript Public

    Analysis code and Latex source of the manuscript describing the conditional permutation test of confounding bias in predictive modelling.

    Jupyter Notebook 1 1

  3. RPN-signature RPN-signature Public

    Forked from spisakt/RPN-signature

    Supplementary analasys for The Resting-state Pain susceptibility Network signature.

    Jupyter Notebook 1

  4. old_website old_website Public

    Website of the PNI research lab

    HTML 1

  5. ALIIAS ALIIAS Public

    Python 1 1

  6. predmod_lecture predmod_lecture Public

    Jupyter Book "Introduction to predictive modelling"

    Jupyter Notebook

Repositories

Showing 10 of 25 repositories
  • quickbrain Public

    quick and beautiful brain plots for python

    pni-lab/quickbrain’s past year of commit activity
    Python 5 2 0 0 Updated May 19, 2026
  • pni-lab.github.io Public

    Lab website

    pni-lab/pni-lab.github.io’s past year of commit activity
    1 4 0 0 Updated Apr 9, 2026
  • fep-attractor-network Public

    Manuscript source: Self-orthogonalizing attractor neural networks emerging from the free energy principle

    pni-lab/fep-attractor-network’s past year of commit activity
    Jupyter Notebook 24 5 1 0 Updated Apr 3, 2026
  • PUMI Public

    PUMI: neuroimaging Pipelines Using Modular workflow Integration

    pni-lab/PUMI’s past year of commit activity
    Python 2 GPL-3.0 0 36 1 Updated Mar 15, 2026
  • connattractor Public

    Connectome-based Hopfiled Neural Networks (fcHNN)

    pni-lab/connattractor’s past year of commit activity
    Jupyter Notebook 11 GPL-3.0 5 0 1 Updated Mar 13, 2026
  • placebo-conditioning-meta-analysis Public
    pni-lab/placebo-conditioning-meta-analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 2, 2026
  • RLBF Public

    Reinforcement Learning via Brain Feedback (RLBF)

    pni-lab/RLBF’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Dec 4, 2025
  • AdaptiveSplitAnalysis Public

    Analysis for the AdaptiveSplit's manuscript.

    pni-lab/AdaptiveSplitAnalysis’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 20, 2025
  • dwi-replicability Public

    This repository explores the replicability of connectome-based predictive modeling (CPM) and brain-wide association studies (BWAS) using diffusion MRI.

    pni-lab/dwi-replicability’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated May 8, 2025
  • adaptivesplit Public

    External validation of machine learning models with adaptive sample splitting

    pni-lab/adaptivesplit’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jan 20, 2025
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