Cleanup agent-file-template.md

[yskkin]

Description

agent-file-template.md is removed at fc3d124.
This pr removes remaining reference to agent-file-template.md

Testing

• Tested locally with uv run specify --help
• Ran existing tests with uv sync && uv run pytest
• Tested with a sample project (if applicable)

AI Disclosure

• I did not use AI assistance for this contribution
• I did use AI assistance (describe below)

[Copilot]

Pull request overview

Note

Copilot was unable to run its full agentic suite in this review.

Removes the self-test preset’s agent file template so the self-test preset no longer provides/replaces an agent-file-template.

Changes:

• Deleted presets/self-test/templates/agent-file-template.md.
• Removed the agent-file-template entry from presets/self-test/preset.yml.
• Updated presets/ARCHITECTURE.md to reflect the removed template file.

Reviewed changes

Copilot reviewed 3 out of 3 changed files in this pull request and generated no comments.

File	Description
presets/self-test/templates/agent-file-template.md	Removes the self-test agent file template content.
presets/self-test/preset.yml	Stops the self-test preset from providing/replacing agent-file-template.
presets/ARCHITECTURE.md	Updates documentation to remove the template from the listed tree.

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