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ericksamera/README.md

Hey, I'm Erick 🧬

Bioinformatician building reproducible NGS workflows and genomics tools.

Python · R · Bash · Go · Julia · Snakemake · SLURM · Git · Bioconda

variant QC · microbial genomics · metagenomics · assay bioinformatics · sequencing workflows

LinkedIn · ORCID · bioinformatics workbook · sequence tools

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  1. KPU-AGC/ipcr KPU-AGC/ipcr Public

    Fast in-silico PCR toolkit for primer/probe-supported amplicon discovery with IUPAC-aware matching and thermodynamic ranking.

    Go 2

  2. radigest radigest Public

    Go-based genomics tool for FASTA restriction digest simulation, size-selected fragment export, and GBS/ddRAD workflow support.

    Go

  3. KPU-AGC/bulk-segregant-analysis KPU-AGC/bulk-segregant-analysis Public

    Reproducible bulk segregant analysis pipeline for mapping trait-associated genomic regions from pooled sequencing data using ΔAF/G′ statistics, null simulation, peak calling, and annotation.

    Python

  4. membrane-protein-trafficking membrane-protein-trafficking Public archive

    Cell-level analysis of membrane protein trafficking via image segmentation and machine learning.

    Python