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1. oculen-bio oculen-bio Public

   Resilience-first analysis platform for synthetic biological circuits, designed to identify fragile parameters and hidden interaction failures before wet-lab implementation.

2. synbio-projects synbio-projects Public

   A growing collection of synthetic biology simulations focused on gene circuits, parameter sweeps, and system modeling using Tellurium, Antimony, and Python.

   Jupyter Notebook

3. BioFSM BioFSM Public

   A playable genetic circuit simulation game where players test logic-based inputs (IPTG, AHL, aTc) and navigate synthetic feedback loops. Built with Tellurium, Streamlit, and a custom FSM engine. In…

   Python

4. Tripwire-Memory-Circuit Tripwire-Memory-Circuit Public

   A synthetic biology logic circuit that combines memory, logic gating, and reset to simulate FSM-like behavior using AraC, IPTG, AHL, and GFP.

   Jupyter Notebook