Concise spatial biology workflows for spatial transcriptomics, multiplex imaging, and multimodal biomedical analysis.
The notebook demonstrates:
- Visium spatial transcriptomics preprocessing
- QC analysis
- UMAP + Leiden clustering
- Marker gene visualization
- Spatial autocorrelation (Moran's I)
- Differential expression between clusters
pip install -r requirements.txt
jupyter lab notebooks/spatialbio_transcriptomics_workflow.ipynb