From f8c54a00446e9e111fc32365f7cafee47a69183f Mon Sep 17 00:00:00 2001 From: Lucas Smith Date: Mon, 18 May 2026 09:46:57 +1000 Subject: [PATCH] fix(writer): renumber objects densely on full save MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit writeComplete previously preserved original object numbers from the registry, which left gaps whenever orphans were dropped during garbage collection. The resulting xref was sparse — /Size reported the max original number while the actual entry count was smaller, producing files where the trailer's stated size didn't match reality. Renumber reachable objects to a contiguous 1..N range in a single pass: walk the graph, build an old-ref → new-ref map, then remap refs inside each object as it's written. Dangling refs (targets not in the registry) become PdfNull per PDF 1.7 §7.3.10, since the old number no longer exists in the new file. Move the "objNum gen" key formatter onto PdfRef as an instance method (ref.key()) so it's reusable and self-describing, replacing the local helper in pdf-writer. Also bumps dev/runtime deps (oxlint 1.39→1.65, vitest 4.0→4.1, lint-staged 16.2→16.4, pkijs/asn1js/@noble/* patches, etc.) and drops @typescript-eslint/prefer-const from .oxlintrc.json since newer oxlint removed that alias — the core prefer-const rule still applies. --- .oxlintrc.json | 1 - bun.lock | 172 +++++++++++++++----------- package.json | 30 ++--- src/objects/pdf-ref.ts | 12 ++ src/writer/pdf-writer.test.ts | 96 +++++++++++++- src/writer/pdf-writer.ts | 227 +++++++++++++++++++++++----------- 6 files changed, 374 insertions(+), 164 deletions(-) diff --git a/.oxlintrc.json b/.oxlintrc.json index aad53f5..333da32 100644 --- a/.oxlintrc.json +++ b/.oxlintrc.json @@ -10,7 +10,6 @@ "no-useless-concat": "off", "no-unused-vars": "off", "prefer-const": "error", - "@typescript-eslint/prefer-const": "error", "@typescript-eslint/no-extraneous-class": "off", "@typescript-eslint/await-thenable": "error", "@typescript-eslint/no-floating-promises": "error", diff --git a/bun.lock b/bun.lock index fa00eed..f56a6f4 100644 --- a/bun.lock +++ b/bun.lock @@ -5,30 +5,30 @@ "": { "name": "pdfbox-ts", "dependencies": { - "@noble/ciphers": "^2.1.1", - "@noble/hashes": "^2.0.1", - "@scure/base": "^2.0.0", - "asn1js": "^3.0.7", - "lru-cache": "^11.2.6", + "@noble/ciphers": "^2.2.0", + "@noble/hashes": "^2.2.0", + "@scure/base": "^2.2.0", + "asn1js": "^3.0.10", + "lru-cache": "^11.3.6", "pako": "^2.1.0", - "pkijs": "^3.3.3", + "pkijs": "^3.4.0", }, "devDependencies": { - "@cantoo/pdf-lib": "^2.6.1", - "@google-cloud/kms": "^5.0.0", - "@google-cloud/secret-manager": "^6.0.0", - "@types/bun": "^1.3.5", + "@cantoo/pdf-lib": "^2.6.5", + "@google-cloud/kms": "^5.5.0", + "@google-cloud/secret-manager": "^6.1.2", + "@types/bun": "^1.3.14", "@types/pako": "^2.0.4", "@vitest/coverage-v8": "4.0.16", "husky": "^9.1.7", - "lint-staged": "^16.2.7", + "lint-staged": "^16.4.0", "oxfmt": "^0.24.0", - "oxlint": "^1.39.0", - "oxlint-tsgolint": "^0.11.1", + "oxlint": "^1.65.0", + "oxlint-tsgolint": 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"sha512-Bf+ILmBgretUrdJxzXM0SgXLZ3XfiaUuOj/IKQHuTXip+05Xn+uyEYdVg0kYDipTBcLrCVyUzAPz7QmArb0mmw=="], + "wrap-ansi/string-width": ["string-width@7.2.0", "", { "dependencies": { "emoji-regex": "^10.3.0", "get-east-asian-width": "^1.0.0", "strip-ansi": "^7.1.0" } }, "sha512-tsaTIkKW9b4N+AEj+SVA+WhJzV7/zMhcSu78mLKWSk7cXMOSHsBKFWUs0fWwq8QyK3MgJBQRX6Gbi4kYbdvGkQ=="], "wrap-ansi-cjs/ansi-styles": ["ansi-styles@4.3.0", "", { "dependencies": { "color-convert": "^2.0.1" } }, "sha512-zbB9rCJAT1rbjiVDb2hqKFHNYLxgtk8NURxZ3IZwD3F6NtxbXZQCnnSi1Lkx+IDohdPlFp222wVALIheZJQSEg=="], @@ -749,6 +777,10 @@ "@isaacs/cliui/string-width/emoji-regex": ["emoji-regex@9.2.2", "", {}, "sha512-L18DaJsXSUk2+42pv8mLs5jJT2hqFkFE4j21wOmgbUqsZ2hL72NsUU785g9RXgo3s0ZNgVl42TiHp3ZtOv/Vyg=="], + "@vitest/runner/@vitest/utils/tinyrainbow": ["tinyrainbow@3.1.0", "", {}, "sha512-Bf+ILmBgretUrdJxzXM0SgXLZ3XfiaUuOj/IKQHuTXip+05Xn+uyEYdVg0kYDipTBcLrCVyUzAPz7QmArb0mmw=="], + + "@vitest/snapshot/@vitest/utils/tinyrainbow": ["tinyrainbow@3.1.0", "", {}, "sha512-Bf+ILmBgretUrdJxzXM0SgXLZ3XfiaUuOj/IKQHuTXip+05Xn+uyEYdVg0kYDipTBcLrCVyUzAPz7QmArb0mmw=="], + "cliui/string-width/emoji-regex": ["emoji-regex@8.0.0", "", {}, "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A=="], "cliui/string-width/is-fullwidth-code-point": ["is-fullwidth-code-point@3.0.0", "", {}, "sha512-zymm5+u+sCsSWyD9qNaejV3DFvhCKclKdizYaJUuHA83RLjb7nSuGnddCHGv0hk+KY7BMAlsWeK4Ueg6EV6XQg=="], diff --git a/package.json b/package.json index cc26a0f..918450b 100644 --- a/package.json +++ b/package.json @@ -64,30 +64,30 @@ "typecheck": "tsc --noEmit" }, "dependencies": { - "@noble/ciphers": "^2.1.1", - "@noble/hashes": "^2.0.1", - "@scure/base": "^2.0.0", - "asn1js": "^3.0.7", - "lru-cache": "^11.2.6", + "@noble/ciphers": "^2.2.0", + "@noble/hashes": "^2.2.0", + "@scure/base": "^2.2.0", + "asn1js": "^3.0.10", + "lru-cache": "^11.3.6", "pako": "^2.1.0", - "pkijs": "^3.3.3" + "pkijs": "^3.4.0" }, "devDependencies": { - "@cantoo/pdf-lib": "^2.6.1", - "@google-cloud/kms": "^5.0.0", - "@google-cloud/secret-manager": "^6.0.0", - "@types/bun": "^1.3.5", + "@cantoo/pdf-lib": "^2.6.5", + "@google-cloud/kms": "^5.5.0", + "@google-cloud/secret-manager": "^6.1.2", + "@types/bun": "^1.3.14", "@types/pako": "^2.0.4", "@vitest/coverage-v8": "4.0.16", "husky": "^9.1.7", - "lint-staged": "^16.2.7", + "lint-staged": "^16.4.0", "oxfmt": "^0.24.0", - "oxlint": "^1.39.0", - "oxlint-tsgolint": "^0.11.1", + "oxlint": "^1.65.0", + "oxlint-tsgolint": "^0.11.5", "pdf-lib": "^1.17.1", "tsdown": "^0.18.4", - "typescript": "^5", - "vitest": "^4.0.16" + "typescript": "^5.9.3", + "vitest": "^4.1.6" }, "peerDependencies": { "@google-cloud/kms": "^5.0.0", diff --git a/src/objects/pdf-ref.ts b/src/objects/pdf-ref.ts index 77312c7..e32ac6e 100644 --- a/src/objects/pdf-ref.ts +++ b/src/objects/pdf-ref.ts @@ -34,6 +34,7 @@ export class PdfRef implements PdfPrimitive { * Get or create an interned PdfRef for the given object/generation pair. */ static of(objectNumber: number, generation: number = 0): PdfRef { + // Build the cache key without allocating a temporary PdfRef. const key = `${objectNumber} ${generation}`; let cached = PdfRef.cache.get(key); @@ -46,6 +47,17 @@ export class PdfRef implements PdfPrimitive { return cached; } + /** + * Stable string key for this ref ("objNum gen"). + * + * Useful as a Map/Set key when PdfRef identity isn't reliable — e.g. when + * instances may be evicted from the LRU cache, or when two parts of the + * code construct equivalent refs independently. + */ + key(): string { + return `${this.objectNumber} ${this.generation}`; + } + /** * Clear the reference cache. * diff --git a/src/writer/pdf-writer.test.ts b/src/writer/pdf-writer.test.ts index a38b86d..c6c17d6 100644 --- a/src/writer/pdf-writer.test.ts +++ b/src/writer/pdf-writer.test.ts @@ -260,12 +260,100 @@ describe("writeComplete", () => { const result = writeComplete(registry, { root: catalogRef }); const text = new TextDecoder().decode(result.bytes); - // Should NOT include orphan object + // Orphan dropped entirely, catalog kept expect(text).not.toContain("/Type /Orphan"); - expect(text).not.toContain("1 0 obj"); // Orphan was obj 1 - // Should include catalog expect(text).toContain("/Type /Catalog"); - expect(text).toContain("2 0 obj"); // Catalog is obj 2 + }); + + it("renumbers reachable objects densely starting at 1", () => { + const registry = new ObjectRegistry(); + + // Orphan takes the first slot so renumbering visibly shifts the catalog. + registry.register(PdfDict.of({ Type: PdfName.of("Orphan") })); + + const catalog = PdfDict.of({ Type: PdfName.Catalog }); + const catalogRef = registry.register(catalog); + + const result = writeComplete(registry, { root: catalogRef }); + const text = new TextDecoder().decode(result.bytes); + + // Catalog (originally object 2) gets renumbered to 1 so the xref is dense + expect(text).toContain("1 0 obj"); + expect(text).not.toContain("2 0 obj"); + + // Dense xref: free entry + one in-use entry, /Root points at the new slot + expect(text).toContain("/Size 2"); + expect(text).toContain("/Root 1 0 R"); + }); + + it("produces dense xref when only the tail of the registry is reachable", () => { + const registry = new ObjectRegistry(); + + // Several orphan objects come before the reachable catalog + registry.register(PdfDict.of({ Type: PdfName.of("Orphan1") })); + registry.register(PdfDict.of({ Type: PdfName.of("Orphan2") })); + registry.register(PdfDict.of({ Type: PdfName.of("Orphan3") })); + + const catalog = PdfDict.of({ Type: PdfName.Catalog }); + const catalogRef = registry.register(catalog); + + const result = writeComplete(registry, { root: catalogRef }); + const text = new TextDecoder().decode(result.bytes); + + // Only the catalog survives, renumbered to object 1 + expect(text).toContain("1 0 obj"); + expect(text).not.toContain("2 0 obj"); + expect(text).not.toContain("3 0 obj"); + expect(text).not.toContain("4 0 obj"); + + // /Size lines up with the actual number of in-use entries + expect(text).toContain("/Size 2"); + expect(text).toContain("/Root 1 0 R"); + + // xref has a single subsection covering 0..1, no gaps + expect(text).toMatch(/xref\n0 2\n/); + }); + + it("rewrites internal refs to use the new numbering", () => { + const registry = new ObjectRegistry(); + + // Orphan padding so renumbering actually shifts the catalog/child. + registry.register(PdfDict.of({ Type: PdfName.of("Orphan1") })); + registry.register(PdfDict.of({ Type: PdfName.of("Orphan2") })); + + const child = PdfDict.of({ Type: PdfName.of("Child") }); + const childRef = registry.register(child); + + const catalog = PdfDict.of({ Type: PdfName.Catalog, Child: childRef }); + const catalogRef = registry.register(catalog); + + const result = writeComplete(registry, { root: catalogRef }); + const text = new TextDecoder().decode(result.bytes); + + // child becomes object 1, catalog becomes object 2 (registry order) + expect(text).toContain("/Child 1 0 R"); + expect(text).toContain("/Root 2 0 R"); + expect(text).toContain("/Size 3"); + + // Old numbers must not leak through (childRef was originally 3) + expect(text).not.toContain("/Child 3 0 R"); + }); + + it("replaces dangling refs with null", () => { + const registry = new ObjectRegistry(); + + // Catalog points at a ref whose target was never registered. + const dangling = PdfRef.of(99, 0); + const catalog = PdfDict.of({ Type: PdfName.Catalog, Stale: dangling }); + const catalogRef = registry.register(catalog); + + const result = writeComplete(registry, { root: catalogRef }); + const text = new TextDecoder().decode(result.bytes); + + // The dangling ref is replaced with literal null in the output + expect(text).toContain("/Stale null"); + expect(text).not.toContain("99 0 R"); + expect(text).toContain("/Size 2"); }); it("includes objects reachable through indirect references", () => { diff --git a/src/writer/pdf-writer.ts b/src/writer/pdf-writer.ts index 88640b2..07b1053 100644 --- a/src/writer/pdf-writer.ts +++ b/src/writer/pdf-writer.ts @@ -11,11 +11,11 @@ import { clearAllDirtyFlags, collectChanges } from "#src/document/change-collect import type { ObjectRegistry } from "#src/document/object-registry"; import { FilterPipeline } from "#src/filters/filter-pipeline"; import { CR, LF } from "#src/helpers/chars"; -import { max } from "#src/helpers/math"; import { ByteWriter } from "#src/io/byte-writer"; import { PdfArray } from "#src/objects/pdf-array"; import { PdfDict } from "#src/objects/pdf-dict"; import { PdfName } from "#src/objects/pdf-name"; +import { PdfNull } from "#src/objects/pdf-null"; import type { PdfObject } from "#src/objects/pdf-object"; import { PdfRef } from "#src/objects/pdf-ref"; import { PdfStream } from "#src/objects/pdf-stream"; @@ -271,6 +271,18 @@ function encryptStreamDict(stream: PdfStream, ctx: EncryptionContext): PdfStream return encrypted; } +/** + * Binary marker required after the %PDF-x.y header to flag the file as + * binary to text-mode tools (PDF 1.7 §7.5.2). Four high bytes after a `%`. + */ +const BINARY_MARKER = new Uint8Array([0x25, 0xe2, 0xe3, 0xcf, 0xd3, 0x0a]); // %âãÏÓ\n + +/** + * A ref remap built by phase 2 of the full save. Maps each reachable old + * ref (keyed by `PdfRef.key`) to its new dense object number. + */ +type RefRemap = Map; + /** * Collect all refs reachable from the document root and trailer entries. * @@ -299,7 +311,7 @@ function collectReachableRefs( const obj = stack.pop()!; if (obj instanceof PdfRef) { - const key = `${obj.objectNumber} ${obj.generation}`; + const key = obj.key(); if (visited.has(key)) { continue; @@ -329,6 +341,101 @@ function collectReachableRefs( return visited; } +/** + * Build a dense ref remap. + * + * Iterates the registry in insertion order and assigns reachable objects new, + * sequential object numbers starting at 1 with generation 0. Orphan objects + * (not in `reachableKeys`) and dangling refs (in `reachableKeys` but not in + * the registry) are dropped — they receive no slot in the new file. + * + * Returns both the lookup map and the ordered list of objects to write, so + * callers can iterate once for the write pass. + */ +function buildRefRemap( + registry: ObjectRegistry, + reachableKeys: Set, +): { + remap: RefRemap; + order: { newRef: PdfRef; obj: PdfObject }[]; +} { + const remap: RefRemap = new Map(); + const order: { newRef: PdfRef; obj: PdfObject }[] = []; + + let nextNum = 1; + + for (const [oldRef, obj] of registry.entries()) { + const key = oldRef.key(); + + if (!reachableKeys.has(key)) { + continue; + } + + const newRef = PdfRef.of(nextNum++, 0); + + remap.set(key, newRef); + order.push({ newRef, obj }); + } + + return { remap, order }; +} + +/** + * Remap PdfRefs within an object tree. + * + * Returns a new object with each PdfRef replaced by its remapped equivalent. + * Refs that aren't in the map (e.g. dangling references to objects that + * weren't registered) are replaced with `PdfNull` — per PDF 1.7 spec §7.3.10, + * "an indirect reference to an undefined object… shall be treated as a + * reference to the null object", so this matches reader behavior while + * keeping the on-disk numbering dense. + * + * The input is not mutated. Primitives (numbers, names, strings, bools, null, + * raw bytes) pass through unchanged. + */ +function remapRefs(obj: PdfObject, remap: RefRemap): PdfObject { + if (obj instanceof PdfRef) { + return remap.get(obj.key()) ?? PdfNull.instance; + } + + if (obj instanceof PdfStream) { + const next = new PdfStream([], obj.data); + + for (const [key, value] of obj) { + if (key.value === "Length") { + // Length is rewritten by PdfStream.toBytes from the data length + continue; + } + + next.set(key, remapRefs(value, remap)); + } + + return next; + } + + if (obj instanceof PdfDict) { + const next = new PdfDict(); + + for (const [key, value] of obj) { + next.set(key, remapRefs(value, remap)); + } + + return next; + } + + if (obj instanceof PdfArray) { + const next = new PdfArray(); + + for (const item of obj) { + next.push(remapRefs(item, remap)); + } + + return next; + } + + return obj; +} + /** * Write a complete PDF from scratch. * @@ -351,79 +458,71 @@ function collectReachableRefs( * ``` */ export function writeComplete(registry: ObjectRegistry, options: WriteOptions): WriteResult { - const writer = new ByteWriter(undefined, { - initialSize: options.sizeHint, - }); + const writer = new ByteWriter(undefined, { initialSize: options.sizeHint }); const compress = options.compressStreams ?? true; const threshold = options.compressionThreshold ?? DEFAULT_COMPRESSION_THRESHOLD; - // Version - const version = options.version ?? "1.7"; - writer.writeAscii(`%PDF-${version}\n`); + // Header: %PDF-x.y followed by a binary marker line. + writer.writeAscii(`%PDF-${options.version ?? "1.7"}\n`); + writer.writeBytes(BINARY_MARKER); - // Binary comment (signals binary file to text tools) - // Use high-byte characters as recommended by PDF spec - writer.writeBytes(new Uint8Array([0x25, 0xe2, 0xe3, 0xcf, 0xd3, 0x0a])); // %âãÏÓ\n + // Walk the object graph from the trailer entries (Root, Info, Encrypt) to + // find every ref the document actually uses. Orphans are dropped. + const reachableKeys = collectReachableRefs(registry, options.root, options.info, options.encrypt); - // Track offsets for xref - const offsets = new Map(); + // Assign reachable objects fresh sequential numbers (1..N) in registry + // insertion order so /Size matches the number of written objects. + const { remap, order } = buildRefRemap(registry, reachableKeys); - // Collect only reachable objects (garbage collection) - // This ensures orphan objects are not written to the output - const reachableKeys = collectReachableRefs(registry, options.root, options.info, options.encrypt); + // Resolve a trailer ref to its remapped form. Falls back to the original + // for refs that couldn't be resolved during graph collection (broken inputs). + const lookup = (ref: PdfRef | undefined): PdfRef | undefined => + ref && (remap.get(ref.key()) ?? ref); - // Write only reachable objects and record offsets - for (const [ref, obj] of registry.entries()) { - const key = `${ref.objectNumber} ${ref.generation}`; + const trailer = { + root: lookup(options.root) ?? options.root, + info: lookup(options.info), + encrypt: lookup(options.encrypt), + id: options.id, + }; - if (!reachableKeys.has(key)) { - continue; // Skip orphan objects - } - // Prepare object (compress streams if needed) + // Write each object: compress → remap refs → encrypt (if needed). Encryption + // uses the new object number since that's what the reader derives the + // per-object key from. Object 0 is the free-list head, always first. + const entries: XRefWriteEntry[] = [ + { objectNumber: 0, generation: 65535, type: "free", offset: 0 }, + ]; + + for (const { newRef, obj } of order) { let prepared = prepareObjectForWrite(obj, compress, threshold); - // Apply encryption if security handler is provided - // Skip encrypting the /Encrypt dictionary itself - if (options.securityHandler && options.encrypt && ref !== options.encrypt) { + prepared = remapRefs(prepared, remap); + + if (options.securityHandler && trailer.encrypt && newRef !== trailer.encrypt) { prepared = encryptObject(prepared, { handler: options.securityHandler, - objectNumber: ref.objectNumber, - generation: ref.generation, + objectNumber: newRef.objectNumber, + generation: newRef.generation, }); } - offsets.set(ref.objectNumber, { + entries.push({ + objectNumber: newRef.objectNumber, + generation: newRef.generation, + type: "inuse", offset: writer.position, - generation: ref.generation, }); - writeIndirectObject(writer, ref, prepared); + writeIndirectObject(writer, newRef, prepared); } - // Record xref offset before writing it const xrefOffset = writer.position; - // Build xref entries - const entries: XRefWriteEntry[] = [ - // Object 0 is always the free list head - { objectNumber: 0, generation: 65535, type: "free", offset: 0 }, - ]; - - for (const [objNum, info] of offsets) { - entries.push({ - objectNumber: objNum, - generation: info.generation, - type: "inuse", - offset: info.offset, - }); - } - - // Write xref section if (options.useXRefStream) { - const xrefObjNum = registry.nextObjectNumber; + // The xref stream itself takes the slot just past the last regular object. + const xrefObjNum = order.length + 1; - // Add entry for the xref stream itself entries.push({ objectNumber: xrefObjNum, generation: 0, @@ -431,39 +530,19 @@ export function writeComplete(registry: ObjectRegistry, options: WriteOptions): offset: xrefOffset, }); - // Size is max object number + 1 - const size = - max( - entries.map(e => e.objectNumber), - 0, - ) + 1; - writeXRefStream(writer, { + ...trailer, entries, - size, + size: xrefObjNum + 1, xrefOffset, - root: options.root, - info: options.info, - encrypt: options.encrypt, - id: options.id, streamObjectNumber: xrefObjNum, }); } else { - // Size is max object number + 1 - const size = - max( - entries.map(e => e.objectNumber), - 0, - ) + 1; - writeXRefTable(writer, { + ...trailer, entries, - size, + size: order.length + 1, xrefOffset, - root: options.root, - info: options.info, - encrypt: options.encrypt, - id: options.id, }); }